ERR1391261.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391261.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	589619
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

$Duplication level graph$

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4107	0.6965515019020757	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2895	0.49099503238532	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCCGTC	1397	0.2369326632961285	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGCATATCTCGTATGCC	1304	0.22115976588271408	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	730	0.12380876464293043	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	602	0.10209983056855358	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAAGCCG	340	42.348152	13
CGTCATA	340	42.348152	24
GGCGGTC	465	41.608196	35
TTCGGTA	470	41.16556	22
TTCCTCG	430	40.83358	10
TCGGGGA	475	40.732235	14
CGGTATT	475	40.732235	24
TGCCGTC	155	40.654354	45
GACGTCA	355	40.558796	22
ACGTCAT	355	40.558796	23
TCGGTAT	480	40.307938	23
AGCCGAT	360	39.99548	15
GCCGATG	360	39.99548	16
AAGCCGA	360	39.99548	14
TCCTCGG	440	39.90554	11
ATTCGGT	485	39.8924	21
AATTCGG	485	39.8924	20
GAATTCG	485	39.8924	19
CAGGCGG	480	39.83924	33
TGACGTC	365	39.44759	21