ERR1391260.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391260.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	680751
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	5666	0.8323160744530673	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3834	0.5632015230238369	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCCGTC	1608	0.23620971544661704	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC	1394	0.20477384535608467	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	852	0.12515589400529709	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	772	0.11340416686864947	No Hit

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGACGTC	640	43.23718	21
ATGACGT	640	43.23718	20
CCGATGA	645	42.902004	17
GACGTCA	645	42.902004	22
GATGACG	655	42.590485	19
AGCCGAT	650	42.57199	15
GCCGATG	655	42.247013	16
ACGTCAT	655	42.247013	23
CGATGAC	655	42.247013	18
CGTCATA	655	42.247013	24
TAAGCCG	665	41.950027	13
GGCGGTC	440	41.926964	35
CGGTCTC	450	41.495186	37
GCGGTCT	445	41.455868	36
AAGCCGA	680	41.02466	14
TATGCCG	160	40.776527	43
CGGTATT	460	40.593117	24
TCGGGGA	455	40.54475	14
GAATTCG	465	40.156635	19
AGGCGGT	460	40.104046	34