ERR1391258.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391258.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	701751
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4850	0.691128334694215	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3429	0.48863485766318826	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTGTAATCTCGTATGCCGTC	1138	0.16216578244990032	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	742	0.10573551017383659	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	490	43.15616	22
TAAGCCG	490	43.15616	13
CGTCATA	490	43.15616	24
GCCGATG	495	42.720238	16
ACGTCAT	495	42.720238	23
AAGCCGA	500	42.293034	14
TCGGTAT	395	41.57543	23
AGCCGAT	510	41.46376	15
TGACGTC	510	41.46376	21
ATGACGT	510	41.46376	20
GAATTCG	400	41.055737	19
AGGCGGT	395	41.008823	34
TCGGGGA	395	41.005905	14
CCGATGA	520	40.666378	17
GATGACG	520	40.666378	19
ATTCGGT	405	40.54888	21
GCGGTCT	400	40.496216	36
GGCGGTC	400	40.496216	35
CGGTCTC	410	40.05723	37
AATTCGG	410	40.05438	20