ERR1391254.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391254.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	452404
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4108	0.9080379483824192	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3119	0.6894280333507219	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCCGTC	920	0.20335806049460217	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCACTAATCTCGTATGCC	709	0.15671833140290536	Illumina Paired End PCR Primer 2 (96% over 33bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	588	0.12997232562046312	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	550	0.12157275355655565	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	445	43.48069	22
CGTCATA	435	43.445824	24
GCCGATG	440	42.95212	16
ATGACGT	440	42.95212	20
ACGTCAT	440	42.95212	23
TAAGCCG	440	42.95212	13
TGACGTC	450	42.4976	21
AGCCGAT	445	42.46951	15
CCGATGA	445	42.46951	17
CGATGAC	445	42.46951	18
GATGACG	450	41.997627	19
AAGCCGA	455	41.536114	14
TATGCCG	95	40.260883	43
TTCGGTA	370	39.524796	22
TCGGTAT	375	38.9978	23
CGGGGAA	380	38.48467	15
GAATTCG	380	38.48467	19
AGGCGGT	385	37.984867	34
GGCGGTC	385	37.984867	35
ATTCGGT	395	37.59281	21