ERR1391252.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391252.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	838166
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4992	0.5955860772209801	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3698	0.44120138492852246	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCCGTC	1095	0.13064237871734238	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCTATGATCTCGTATGCC	908	0.10833176244323918	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAAGCCG	490	43.619442	13
CGATGAC	505	42.771877	18
TGACGTC	500	42.749603	21
GACGTCA	505	42.32634	22
GCCGATG	505	42.32634	16
CGTCATA	505	42.32634	24
ACGTCAT	510	41.911377	23
AGCCGAT	510	41.908875	15
TATGCCG	140	41.782833	43
GGCGGTC	530	41.603386	35
TTCGGTA	525	41.571045	22
CCGATGA	515	41.504467	17
TTCCTCG	450	41.50209	10
AATTCGG	530	41.178864	20
ATGACGT	520	41.10539	20
GATGACG	520	41.10539	19
AAGCCGA	520	41.102936	14
CTCGGGG	455	41.04113	13
CGGTATT	530	40.754337	24
TCGGTAT	535	40.37346	23