ERR1391251.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391251.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	700667
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4264	0.6085629835570964	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3194	0.45585135306786245	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTGTATCTCGTATGCCGTC	1603	0.2287820034338709	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTACTGTATCTCGTATGCC	1433	0.20451940793558138	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	832	0.11874399679162856	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCATA	405	43.885963	24
GCCGATG	410	43.350773	16
GCGGTCT	540	42.913807	36
GGCGGTC	535	42.89434	35
TAAGCCG	420	42.85429	13
CCGATGA	415	42.828472	17
TCGGGGA	550	42.54262	14
CGGTATT	550	42.54262	24
AGCCGAT	420	42.31861	15
GACGTCA	420	42.31861	22
ACGTCAT	420	42.31861	23
CGATGAC	420	42.31861	18
GAATTCG	555	42.159355	19
TGACGTC	425	41.820744	21
AGGCGGT	550	41.724495	34
AATTCGG	565	41.41317	20
TCGGTAT	565	41.41317	23
AAGCCGA	435	41.376556	14
ATGACGT	430	41.334457	20
TTCGGTA	580	40.34214	22