ERR1391241.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391241.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	570979
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4587	0.8033570411521264	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3179	0.5567630333164617	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCCGTC	1384	0.24239070088392045	Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTGTATATCTCGTATGCC	1359	0.2380122561425201	Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	836	0.1464151921524259	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	649	0.11366442548675171	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGACGTC	520	43.264175	21
CCGATGA	515	43.247375	17
TAAGCCG	515	43.247375	13
ATTCGGT	440	42.94953	21
GACGTCA	525	42.85214	22
AGCCGAT	520	42.831535	15
AAGCCGA	520	42.831535	14
ACGTCAT	530	42.447872	23
GATGACG	530	42.447872	19
CGTCATA	535	42.051167	24
AATTCGG	455	42.02806	20
GCCGATG	530	42.023396	16
GCGGTCT	450	41.995094	36
GAATTCG	450	41.995094	19
TCGGTAT	450	41.995094	23
CGATGAC	535	41.630653	18
CGGTCTC	465	41.608044	37
AGGCGGT	465	41.12423	34
GGCGGTC	460	41.082157	35
CGGTATT	460	41.082157	24