Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391240.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 676773 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4303 | 0.6358114168266169 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3194 | 0.47194554156268054 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCCGTC | 1458 | 0.215434126361424 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC | 1306 | 0.19297460152813425 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 809 | 0.11953786572454869 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 150 | 0.0 | 44.994904 | 43 |
AGCCGAT | 535 | 0.0 | 44.15388 | 15 |
GCCGATG | 535 | 0.0 | 44.15388 | 16 |
CGTCATA | 545 | 0.0 | 43.75651 | 24 |
TAAGCCG | 545 | 0.0 | 43.343716 | 13 |
TGACGTC | 555 | 0.0 | 42.968105 | 21 |
ACGTCAT | 555 | 0.0 | 42.968105 | 23 |
AAGCCGA | 550 | 0.0 | 42.949677 | 14 |
TCGGTAT | 395 | 0.0 | 42.716682 | 23 |
CCGATGA | 555 | 0.0 | 42.562744 | 17 |
TTCGGTA | 400 | 0.0 | 42.182724 | 22 |
CGATGAC | 560 | 0.0 | 42.182724 | 18 |
GACGTCA | 570 | 0.0 | 41.837364 | 22 |
ATGACGT | 575 | 0.0 | 41.473564 | 20 |
GAATTCG | 410 | 0.0 | 41.153873 | 19 |
CGGGGAA | 405 | 0.0 | 41.106453 | 15 |
GGCGGTC | 410 | 0.0 | 40.605156 | 35 |
GATGACG | 585 | 0.0 | 40.38004 | 19 |
ATTCGGT | 420 | 0.0 | 40.17402 | 21 |
AGGCGGT | 420 | 0.0 | 40.17402 | 34 |