FastQCFastQC Report
Mon 6 Jun 2016
ERR1391240.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391240.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences676773
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA43030.6358114168266169No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA31940.47194554156268054No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCCGTC14580.215434126361424Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTATATCTCGTATGCC13060.19297460152813425Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT8090.11953786572454869Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1500.044.99490443
AGCCGAT5350.044.1538815
GCCGATG5350.044.1538816
CGTCATA5450.043.7565124
TAAGCCG5450.043.34371613
TGACGTC5550.042.96810521
ACGTCAT5550.042.96810523
AAGCCGA5500.042.94967714
TCGGTAT3950.042.71668223
CCGATGA5550.042.56274417
TTCGGTA4000.042.18272422
CGATGAC5600.042.18272418
GACGTCA5700.041.83736422
ATGACGT5750.041.47356420
GAATTCG4100.041.15387319
CGGGGAA4050.041.10645315
GGCGGTC4100.040.60515635
GATGACG5850.040.3800419
ATTCGGT4200.040.1740221
AGGCGGT4200.040.1740234