Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391239.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 777517 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 6586 | 0.8470554341577098 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 4495 | 0.5781224076129525 | No Hit |
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 880 | 0.11318080504992174 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAAGCCG | 700 | 0.0 | 43.70835 | 13 |
GCCGATG | 710 | 0.0 | 43.095512 | 16 |
AGCCGAT | 710 | 0.0 | 43.09274 | 15 |
CCGATGA | 720 | 0.0 | 42.496964 | 17 |
GATGACG | 720 | 0.0 | 42.496964 | 19 |
ACGTCAT | 715 | 0.0 | 42.47948 | 23 |
GACGTCA | 730 | 0.0 | 42.22301 | 22 |
CGATGAC | 725 | 0.0 | 42.20388 | 18 |
CGTCATA | 720 | 0.0 | 42.184486 | 24 |
ATGACGT | 740 | 0.0 | 41.65243 | 20 |
AAGCCGA | 740 | 0.0 | 41.64975 | 14 |
TTCGGTA | 660 | 0.0 | 40.906166 | 22 |
TCGGTAT | 660 | 0.0 | 40.906166 | 23 |
TGACGTC | 755 | 0.0 | 40.824898 | 21 |
ATTCGGT | 665 | 0.0 | 40.598602 | 21 |
AATTCGG | 665 | 0.0 | 40.598602 | 20 |
GGCGGTC | 655 | 0.0 | 40.528847 | 35 |
CGGTCTC | 655 | 0.0 | 40.528847 | 37 |
TCCTCGG | 545 | 0.0 | 40.47404 | 11 |
AGGCGGT | 660 | 0.0 | 40.22181 | 34 |