FastQCFastQC Report
Mon 6 Jun 2016
ERR1391239.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391239.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences777517
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA65860.8470554341577098No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA44950.5781224076129525No Hit
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA8800.11318080504992174No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCG7000.043.7083513
GCCGATG7100.043.09551216
AGCCGAT7100.043.0927415
CCGATGA7200.042.49696417
GATGACG7200.042.49696419
ACGTCAT7150.042.4794823
GACGTCA7300.042.2230122
CGATGAC7250.042.2038818
CGTCATA7200.042.18448624
ATGACGT7400.041.6524320
AAGCCGA7400.041.6497514
TTCGGTA6600.040.90616622
TCGGTAT6600.040.90616623
TGACGTC7550.040.82489821
ATTCGGT6650.040.59860221
AATTCGG6650.040.59860220
GGCGGTC6550.040.52884735
CGGTCTC6550.040.52884737
TCCTCGG5450.040.4740411
AGGCGGT6600.040.2218134