ERR1391236.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391236.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	760730
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	5252	0.6903894943015262	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3693	0.4854547605589368	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGTAATCTCGTATGCCGTC	909	0.11949048939834106	Illumina Paired End PCR Primer 2 (96% over 32bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	840	0.11042025422949009	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGACGTC	545	43.344128	21
AGCCGAT	540	43.328842	15
GCCGATG	545	42.931328	16
TAAGCCG	545	42.931328	13
GACGTCA	555	42.563156	22
GATGACG	550	42.541046	19
CGATGAC	550	42.541046	18
CGTCATA	550	42.541046	24
GCGGTCT	445	42.470295	36
GGCGGTC	450	41.9984	35
CCGATGA	565	41.411633	17
ATGACGT	565	41.411633	20
AATTCGG	460	41.082695	20
ACGTCAT	570	41.04837	23
AAGCCGA	575	40.69143	14
CGGTATT	465	40.64095	24
TCGGTAT	465	40.64095	23
AGGCGGT	475	39.787964	34
CGGTCTC	475	39.787964	37
TTCGGTA	475	39.785347	22