ERR1391233.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391233.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489836
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	2767	0.5648829404127096	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1993	0.406870871067051	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCCGTC	898	0.1833266644346271	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAGAATCTCGTATGCC	799	0.16311581835553124	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	554	0.11309907805877885	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	385	43.243908	22
CGATGAC	375	43.19716	18
GATGACG	380	42.628773	19
TGACGTC	395	42.149124	21
CGTCATA	395	42.149124	24
ATGACGT	390	42.112614	20
CCGATGA	385	42.075153	17
TAAGCCG	385	42.075153	13
GCCGATG	380	42.03671	16
CTCGGGG	275	41.724525	13
ACGTCAT	400	41.62226	23
AAGCCGA	385	41.490776	14
GGCGGTC	320	41.481647	35
CGGTCTC	320	41.481647	37
TCCTCGG	290	41.12638	11
GCGGTCT	330	40.9064	36
AATTCGG	325	40.843464	20
TTCGGTA	325	40.843464	22
AGCCGAT	395	40.440376	15
TCGGGGA	325	40.151203	14