FastQCFastQC Report
Mon 6 Jun 2016
ERR1391232.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391232.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1020762
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTT250.002112579335.98060229
CGTATGC600.00653029618.73989744
CGAATCT600.00653214318.7389837
GAAAGCG900.00366507815.0538624
ACCACGC2355.9117156E-1014.353269
TCGTTGG2052.0760126E-814.3195274
TGCCCGG1108.625481E-414.30976513
CGTTGGA2102.8498107E-813.9785865
CGGGATT1301.9354251E-413.83801514
CGGGAAT1150.001206068913.68894421
GAGCGGT1150.001206961213.68760226
GAAACGG2154.0994564E-813.59665510
CCTTCGT1901.9782765E-613.0737341
TTCGTTG2309.3803465E-812.7630563
AAACGGG2401.7247112E-712.18033611
AACGGGA2251.0460008E-611.99294612
CACCACG2851.0497388E-811.8357258
GGAAACG2301.3636582E-611.732239
CCACGCC2951.749504E-811.43395310
CCAACGA2201.0176645E-511.2903966