FastQCFastQC Report
Mon 6 Jun 2016
ERR1391230.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391230.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences660876
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCT250.00211292335.97754345
GACCGGA453.501702E-529.98355529
TCTCGTA554.1816766E-628.61850241
CGGAAAG507.180622E-526.98519932
CTCGTAT507.184322E-526.98315642
ACCGGAA551.3724412E-424.53230
CGTATGC551.3731462E-424.53014444
TCGTATG551.3731462E-424.53014443
CCGAGGT500.002212534722.5885071
GCGCGAT500.002271821322.48596414
CACGATC500.002271821322.48596415
CCGGAAA654.2513068E-420.75784731
CGCGATC550.003949039620.44178615
AGACCGG807.5887E-519.67670828
ATCTCGT807.593115E-519.67521940
TCGTATA707.0085365E-419.2736859
CCGAGAC750.00111363417.99013325
CTTCGTA1002.0555006E-517.9887717
TTCGTAT901.8730783E-417.4890848
TCTTCGT1257.3533556E-616.2600176