Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391230.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 660876 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGCCT | 25 | 0.002112923 | 35.977543 | 45 |
GACCGGA | 45 | 3.501702E-5 | 29.983555 | 29 |
TCTCGTA | 55 | 4.1816766E-6 | 28.618502 | 41 |
CGGAAAG | 50 | 7.180622E-5 | 26.985199 | 32 |
CTCGTAT | 50 | 7.184322E-5 | 26.983156 | 42 |
ACCGGAA | 55 | 1.3724412E-4 | 24.532 | 30 |
CGTATGC | 55 | 1.3731462E-4 | 24.530144 | 44 |
TCGTATG | 55 | 1.3731462E-4 | 24.530144 | 43 |
CCGAGGT | 50 | 0.0022125347 | 22.588507 | 1 |
GCGCGAT | 50 | 0.0022718213 | 22.485964 | 14 |
CACGATC | 50 | 0.0022718213 | 22.485964 | 15 |
CCGGAAA | 65 | 4.2513068E-4 | 20.757847 | 31 |
CGCGATC | 55 | 0.0039490396 | 20.441786 | 15 |
AGACCGG | 80 | 7.5887E-5 | 19.676708 | 28 |
ATCTCGT | 80 | 7.593115E-5 | 19.675219 | 40 |
TCGTATA | 70 | 7.0085365E-4 | 19.273685 | 9 |
CCGAGAC | 75 | 0.001113634 | 17.990133 | 25 |
CTTCGTA | 100 | 2.0555006E-5 | 17.988771 | 7 |
TTCGTAT | 90 | 1.8730783E-4 | 17.489084 | 8 |
TCTTCGT | 125 | 7.3533556E-6 | 16.260017 | 6 |