FastQCFastQC Report
Mon 6 Jun 2016
ERR1391229.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391229.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences843134
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT352.8288754E-432.1251542
TCTCGTA352.8288754E-432.1251541
TCGTATG352.8288754E-432.1251543
CGGTTTA450.001230654524.98474532
GACCGGT551.373458E-424.53047829
ATCTCGT500.002271374522.48760440
ACCGGTT500.002272157522.48626930
GAGCGAG855.056243E-621.1635536
CGTATGC600.00652982818.73967244
CCGGTTT600.00653206418.7385631
GCGAGAC851.20905424E-418.51920338
CGAGACT851.20905424E-418.51920339
CGCCCGG901.8736572E-417.4893213
AGAGCGA901.8736572E-417.4893235
CGCCCGC1053.0143794E-517.2058661
GAGCGGT800.001668186916.9380326
CCGAGAC800.001717332916.86470425
AGCGAGA952.8313874E-416.5688337
CATCTCG850.002573849215.87360339
AGCGCTC1156.807608E-515.644487