Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391229.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 843134 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 35 | 2.8288754E-4 | 32.12515 | 42 |
TCTCGTA | 35 | 2.8288754E-4 | 32.12515 | 41 |
TCGTATG | 35 | 2.8288754E-4 | 32.12515 | 43 |
CGGTTTA | 45 | 0.0012306545 | 24.984745 | 32 |
GACCGGT | 55 | 1.373458E-4 | 24.530478 | 29 |
ATCTCGT | 50 | 0.0022713745 | 22.487604 | 40 |
ACCGGTT | 50 | 0.0022721575 | 22.486269 | 30 |
GAGCGAG | 85 | 5.056243E-6 | 21.16355 | 36 |
CGTATGC | 60 | 0.006529828 | 18.739672 | 44 |
CCGGTTT | 60 | 0.006532064 | 18.73856 | 31 |
GCGAGAC | 85 | 1.20905424E-4 | 18.519203 | 38 |
CGAGACT | 85 | 1.20905424E-4 | 18.519203 | 39 |
CGCCCGG | 90 | 1.8736572E-4 | 17.48932 | 13 |
AGAGCGA | 90 | 1.8736572E-4 | 17.48932 | 35 |
CGCCCGC | 105 | 3.0143794E-5 | 17.205866 | 1 |
GAGCGGT | 80 | 0.0016681869 | 16.938032 | 6 |
CCGAGAC | 80 | 0.0017173329 | 16.864704 | 25 |
AGCGAGA | 95 | 2.8313874E-4 | 16.56883 | 37 |
CATCTCG | 85 | 0.0025738492 | 15.873603 | 39 |
AGCGCTC | 115 | 6.807608E-5 | 15.64448 | 7 |