FastQCFastQC Report
Mon 6 Jun 2016
ERR1391226.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391226.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593920
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATC352.8285742E-432.12379533
GTCGAGA300.00516022529.9822089
GATCGGA450.001230103324.98517226
GCGCGAT450.001230103324.98517232
GGCGCGA550.00394787220.44241531
ACCACGC1403.101377E-919.2742779
CCACGCC1507.2977855E-917.98932510
ACGCCCA800.001716329716.86499212
CACCACG1552.0750485E-715.9582728
GCGGTTC850.002500527515.94138055
AATGCCG850.002573371915.87293318
AGCGGTT900.003659609715.0557484
CACGCCC1209.7889E-514.99110411
GGGACTA1654.218091E-714.99110414
TCTTCGT950.005241350714.2633396
ATGCCGA950.005393149314.20209819
GGACTAC1150.001205968813.6875315
AAGAGCG1000.007358312613.551321
AGGCGGG1454.866674E-412.4064315
CCACCGC1350.004020968511.6597487
Produced by FastQC (version 0.11.5)