FastQCFastQC Report
Mon 6 Jun 2016
ERR1391219.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391219.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401953
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGCAT300.00516024929.97984911
CGCATGC500.00227091722.48488613
GCGCATG500.00227091722.48488612
CGCCACC600.00636154218.8216925
GGTCTGT850.002570647315.87365928
ACCACGC1004.179952E-415.7394219
CCAGCTA4900.015.60369928
GCGCCTG1108.6149346E-414.30856416
CAGCTAC4650.014.02457629
CTACTCG1150.001204365713.68815532
TGAGTCC1150.001204365713.68815533
GCTACTC3009.094947E-1213.4926131
TAGTCCC2053.361656E-713.1651623
GCTAATT1902.0615862E-613.02080519
TACTCGG1250.002256371312.59310333
CCCAGCT5800.012.40545427
GTAGTCC2207.916242E-712.26753622
AGCTACT4850.012.05525330
GGCATGG3254.5110937E-1011.8142313
GGCGTGG1802.2555448E-411.29301553
Produced by FastQC (version 0.11.5)