FastQCFastQC Report
Mon 6 Jun 2016
ERR1391216.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391216.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences680025
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA401.5654721E-533.7315818
ATCGGAA401.5654721E-533.7315819
GAGCCGC300.005159550329.9836337
ACGCCCG654.8949005E-727.6751612
AGATCGG507.184403E-526.98327817
ATCTCGT550.003947370720.44338240
TCGTTGG907.991868E-620.071744
GCGGTTC707.001675E-419.27660628
AGCGGTT707.005141E-419.27518827
GAGCGGT707.005141E-419.27518826
TCGGAAG750.001113661617.99017520
ATGCCGA901.8720617E-417.4904542
CGCCCGG1104.6576766E-516.35350213
ACCACGC2101.07320375E-1016.0614769
CCGAGAC850.002571812615.87485145
CGTTGGA1156.571785E-515.7083185
ATCTTCG1055.8706285E-415.0538035
AATGCCG1056.057407E-414.99181341
TCGTATA900.00376731414.990719
CACCACG2304.274625E-1014.6648268
Produced by FastQC (version 0.11.5)