FastQCFastQC Report
Mon 6 Jun 2016
ERR1391215.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391215.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1013107
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC750.001114299417.9898729
TCGTATA1004.184308E-415.7411389
CGTATAA900.003767589614.99156110
CGTGAGC2001.4995749E-814.677621
ACGCCCG1108.6237566E-414.31012512
CGCCCGG1901.3404497E-714.20253213
CGGAAGC1453.1201336E-513.9576625
CACCGCG1000.007578360413.4924058
ACGGAAG1555.8392063E-513.05716624
CACGCCC1902.0736788E-613.01898711
ACCACGC2451.6283593E-812.8499099
GCCACCG2157.885186E-611.5524736
ACTAGAC3856.184564E-1111.09764919
CCACCGC1853.036849E-410.9397877
CACCACG3103.6330675E-810.8809718
TATCTTC6650.010.8654854
AATCGCT1450.006852213310.85595813
GAGCCAC5450.010.7720324
GGCTAAT5900.010.67195818
CCGCCAC1500.00854839910.5372574
Produced by FastQC (version 0.11.5)