FastQCFastQC Report
Mon 6 Jun 2016
ERR1391214.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391214.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898790
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACCCG600.006533207418.73815512
CGGCTAA1806.918708E-814.99052317
CGGGTGT950.005236109314.2666321
AGTCTCG950.005239994314.2650384
CCGGCTA1605.0561957E-614.05361616
ATCGTGC1000.007360520313.5517855
CGCCACC1506.242359E-412.0460325
CCTAGTG1350.004024879511.65929635
GTCTCGC1400.005106798411.2931545
ACGGGGT1802.3543724E-411.244143544
TGAGCCG2201.0647444E-511.244143545
ACTAGAC3204.818503E-911.24351819
GACGGGG2056.432207E-510.96928643
AGTGGCG1700.001846458810.58154610
GCGATTC1750.002348645110.27978842
GGCGGAG2006.234686E-410.11916631
AGCGATT1800.0029669259.99423941
CGATTCT1900.00463873759.46822643
CGCTTGA1950.00574794139.22493816
AGACGGG2453.8868847E-49.17838242
Produced by FastQC (version 0.11.5)