Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391213.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 960352 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGCTG | 50 | 0.0022720585 | 22.486828 | 18 |
ACGCCCG | 65 | 4.2543112E-4 | 20.75707 | 12 |
CGCCCGG | 115 | 3.4667773E-6 | 17.598389 | 13 |
GCTCCGC | 80 | 0.0017172833 | 16.865122 | 36 |
GCGGAGG | 165 | 2.3735993E-8 | 16.354057 | 26 |
ACCACGC | 255 | 0.0 | 15.873055 | 9 |
CACCACG | 280 | 0.0 | 15.258919 | 8 |
AGCTCCG | 90 | 0.0037679728 | 14.991219 | 35 |
CCACGCC | 325 | 0.0 | 14.52995 | 10 |
CGGTGAG | 95 | 0.0053960816 | 14.202207 | 17 |
ACCCGGG | 215 | 6.0338243E-7 | 12.550788 | 23 |
CACGCCC | 270 | 4.7057256E-9 | 12.492682 | 11 |
CGGAGGT | 180 | 1.7027802E-5 | 12.492682 | 27 |
AACCCGG | 200 | 3.684465E-6 | 12.367755 | 22 |
AATCGCT | 195 | 3.864997E-5 | 11.531707 | 7 |
GGCGGAG | 255 | 3.7871723E-7 | 11.463873 | 25 |
ACGCCCA | 160 | 0.0011130406 | 11.243414 | 12 |
CCCGGGA | 240 | 2.2754139E-6 | 11.243414 | 24 |
GCCCGGC | 280 | 1.0437725E-7 | 11.243414 | 14 |
GAACCCG | 205 | 6.4338776E-5 | 10.969184 | 21 |