FastQCFastQC Report
Mon 6 Jun 2016
ERR1391213.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391213.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences960352
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGCTG500.002272058522.48682818
ACGCCCG654.2543112E-420.7570712
CGCCCGG1153.4667773E-617.59838913
GCTCCGC800.001717283316.86512236
GCGGAGG1652.3735993E-816.35405726
ACCACGC2550.015.8730559
CACCACG2800.015.2589198
AGCTCCG900.003767972814.99121935
CCACGCC3250.014.5299510
CGGTGAG950.005396081614.20220717
ACCCGGG2156.0338243E-712.55078823
CACGCCC2704.7057256E-912.49268211
CGGAGGT1801.7027802E-512.49268227
AACCCGG2003.684465E-612.36775522
AATCGCT1953.864997E-511.5317077
GGCGGAG2553.7871723E-711.46387325
ACGCCCA1600.001113040611.24341412
CCCGGGA2402.2754139E-611.24341424
GCCCGGC2801.0437725E-711.24341414
GAACCCG2056.4338776E-510.96918421