FastQCFastQC Report
Mon 6 Jun 2016
ERR1391211.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391211.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences798545
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATGG552.761226E-936.79850831
ACCGATG504.8987204E-835.98076630
GACCGAT551.1322845E-732.70978529
CGATGGT651.4097168E-831.137232
AGACCGA709.34504E-725.70054428
CGTATGC802.9818257E-622.49220344
TCGTATG802.9818257E-622.49220343
GAGACCG855.0523686E-621.16515527
TCTCGTA908.270803E-619.99306941
GATCGGA807.590421E-519.67698126
ATCGGAA807.590421E-519.67698127
CTCGTAT951.31894485E-518.94080242
CCGAGAC951.3210834E-518.93724425
ATGCCCG600.0065289118.73998312
AGATCGG851.2087991E-418.5195125
ACCACGC1102.2657714E-618.3992549
AGCGAGA750.001113339217.99150837
TCGGAAG901.8724136E-417.4906528
CGCCACC1459.307041E-817.1241825
CACGCCC952.829513E-416.5700911