FastQCFastQC Report
Mon 6 Jun 2016
ERR1391210.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391210.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences974491
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCCCGA406.1912666E-428.10492317
TCCTTCG550.00395125120.44099442
AACGGGT550.003952425420.43994512
CCTTCGT1503.237801E-1019.5896131
CTTCGCA600.006536688718.73661636
ACGGGTT600.006536688718.73661613
ATCTTCG1401.1962566E-616.1444535
TCGTTGG1855.287802E-915.882654
ATGCCCG1004.1889213E-415.73875712
CGTTGGA1951.0604708E-815.0681555
CGGAAGC900.003771245214.98929326
CGTATAA1351.5917727E-514.98929310
CCGGCTA2101.8681021E-914.98929316
TCGTATA1209.8092394E-514.9892939
CGCCACT1209.8092394E-514.9892939
CTTCGTT2001.4808393E-814.6914512
CTTCGTA1402.2443492E-514.4539617
TCTTCGT1604.7938465E-614.1263956
TTCGTTG2102.8139766E-813.99185853
GACTCCG1301.8529793E-413.9090673