FastQCFastQC Report
Mon 6 Jun 2016
ERR1391209.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391209.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences950378
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGAGC2304.0017767E-1014.73144151
CTTCGTA1403.6212028E-412.8504977
CGTATAA1403.6228122E-412.84982210
TCCAACG1801.6258278E-512.5490055
TTCGTAT1454.8683086E-412.4073788
TCGTATA1454.8704672E-412.4067249
GCCACCG1902.8304057E-511.8885316
ATCTTCG1558.215875E-411.6584295
CGAAGGC1558.530613E-411.6062910
CCACCGC1600.001112383411.2441857
CAACGAA2251.366349E-510.9943147
GGACTAC2301.6604017E-510.8024853
CCAACGA2107.851496E-510.756296
CCGGGTG1500.00852427210.5411641
CGGAGGT1500.008815763510.4934727
TCTTCGT1954.7385457E-410.4253276
CGGTGGC3104.2387E-710.1560388
GGGACTA2751.0973035E-59.8561532
GCGGAGG1850.00372377929.72367926
CGTTTCC2109.3642867E-49.6806611
Produced by FastQC (version 0.11.5)