FastQCFastQC Report
Mon 6 Jun 2016
ERR1391207.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391207.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences815439
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGCC453.5030476E-529.98311629
AGACCGC453.5030476E-529.98311628
CTCGTAT406.184923E-428.1091742
TCTCGTA406.184923E-428.1091741
TATCTCG450.001230719724.98439639
TCGTATG551.3729621E-424.5316443
ATCGGAA751.7049679E-623.98649219
CGTATGC602.474017E-422.49009544
ACCGCCT602.4760718E-422.48733730
GATCGGA702.713524E-522.48733518
AGATCGG702.7148099E-522.48595817
ATCTCGT600.006530098618.73944940
CCGAGAC901.8711269E-417.49229645
ACGCCCG800.001717427716.86446812
CGGCTAA1004.1850173E-415.740170517
AACCCCG1156.811315E-515.64336431
CGCCCGC1351.5246125E-515.05711651
CGCCTCT900.00376675514.99155832
GAGACCG900.00376675514.99155827
CCGGCTA1056.062843E-414.99063916