FastQCFastQC Report
Mon 6 Jun 2016
ERR1391205.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391205.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1043953
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC352.8290058E-432.12578644
GACCGTT352.8305963E-432.12270729
ACCGTTC406.188414E-428.1073730
CGGGCGG754.624404E-520.9868357
AGACCGT550.00395062120.44172328
CCGAGAC951.3227747E-518.93549225
AATGCCG901.873064E-417.49070421
ACCACGC2101.09139364E-1016.0613549
GCGAGAC1301.1122853E-515.56790338
CGTTGGA1806.553273E-815.0576675
CGTTCCT900.003769305314.99059732
GCGGTTC1056.064992E-414.9905968
GCGGATC1209.803043E-514.99059610
ATGCCGA950.00539455214.20297922
CAACGAA1758.2244696E-714.1339917
TCCAACG1656.639346E-613.6887875
CCAACGA1656.639346E-613.6887876
CGAGACT1504.293076E-513.49218339
CGAAATC1000.00758178613.49153710
TCGTATA1000.00758178613.4915379
Produced by FastQC (version 0.11.5)