FastQCFastQC Report
Mon 6 Jun 2016
ERR1391202.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391202.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432437
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT300.005153843729.98797442
TCCAACG706.8309717E-419.3450985
GGTGGCG950.00538727114.2031878
TCGCTTG1250.002256327512.593492515
GGTCTCG1802.3489144E-411.24418925
CGCTTGA1400.005267380711.24418916
GTCTCGA1903.8748558E-410.652390526
AGTGAGC2901.970233E-610.08216343
GGCTAAT2150.00120536169.41482818
GCAACCT2403.151027E-49.37015732
AATTATC2000.00685295749.0277135
GCTAATT3755.777856E-78.99639119
GGTTGCA2250.00182649148.99535237
TTGCAGT3003.2205055E-58.99535239
CTGGCTA2300.00223035168.799816
AGGTTGC2050.0086415888.77595236
TACTCAG2050.0086415888.77595233
CAGTGAG4152.6663838E-78.67122142
GTTGCAG2350.00271067848.6125738
GCAGTGA4203.2010576E-78.56799241
Produced by FastQC (version 0.11.5)