FastQCFastQC Report
Mon 6 Jun 2016
ERR1391200.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391200.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences999879
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCGAT500.00227112822.48852311
CGGGATT1358.6255204E-716.65816514
CGTATAA1104.6568442E-516.3552910
TCGTATA1156.810708E-515.644199
ATCTTCG1108.3975674E-414.3604295
CCCGCCA1108.3975674E-414.3604293
CGCCCGG1108.620189E-414.31087813
TTCGTAT1301.9340866E-413.839098
CCGCCAC1000.007404380513.5398344
CTCCGCC2002.501347E-713.49446437
CGTTGGA1851.4772904E-613.4178535
TCGTTGG1901.9934869E-613.0647524
CTTCGTA1403.6212904E-412.8505857
CCGGCTA1751.2737522E-512.85058516
CCTTCGT1454.7246847E-412.4516711
GCCCGGC2351.3097815E-712.44045814
CCTCCGC1651.0466372E-412.26769436
GCCACCG1506.289937E-412.0354086
TCTTCGT1701.3401044E-411.9469116
AATCGCT1902.9618353E-511.83606513
Produced by FastQC (version 0.11.5)