FastQCFastQC Report
Mon 6 Jun 2016
ERR1391196.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391196.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1269482
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA20070.15809597930494484No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT14680.11563771680102593Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTAT1950.038.07565723
CGGTATT2000.037.12376424
TAAGCCG2550.036.1752713
ACGTCAT2500.035.99880623
GATGACG2500.035.99880619
CGATGAC2500.035.99880618
ATTCGGT2100.035.35596521
TTCGGTA2100.035.35596522
GACGTCA2550.035.29294622
CGTCATA2600.034.61423524
GGCGGTC2100.034.28457335
CCGATGA2700.034.1655317
GCCGATG2800.033.7488816
AAGCCGA2800.032.9453314
GCGGTCT2200.032.72747436
GATCGGA2500.032.39892626
AGGCGGT2250.031.99893634
AGCCGAT2900.031.80928415
ATCGGAA2550.031.7636527
TCCTCGG2150.031.39430411