Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391196.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1269482 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2007 | 0.15809597930494484 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1468 | 0.11563771680102593 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGTAT | 195 | 0.0 | 38.075657 | 23 |
CGGTATT | 200 | 0.0 | 37.123764 | 24 |
TAAGCCG | 255 | 0.0 | 36.17527 | 13 |
ACGTCAT | 250 | 0.0 | 35.998806 | 23 |
GATGACG | 250 | 0.0 | 35.998806 | 19 |
CGATGAC | 250 | 0.0 | 35.998806 | 18 |
ATTCGGT | 210 | 0.0 | 35.355965 | 21 |
TTCGGTA | 210 | 0.0 | 35.355965 | 22 |
GACGTCA | 255 | 0.0 | 35.292946 | 22 |
CGTCATA | 260 | 0.0 | 34.614235 | 24 |
GGCGGTC | 210 | 0.0 | 34.284573 | 35 |
CCGATGA | 270 | 0.0 | 34.16553 | 17 |
GCCGATG | 280 | 0.0 | 33.74888 | 16 |
AAGCCGA | 280 | 0.0 | 32.94533 | 14 |
GCGGTCT | 220 | 0.0 | 32.727474 | 36 |
GATCGGA | 250 | 0.0 | 32.398926 | 26 |
AGGCGGT | 225 | 0.0 | 31.998936 | 34 |
AGCCGAT | 290 | 0.0 | 31.809284 | 15 |
ATCGGAA | 255 | 0.0 | 31.76365 | 27 |
TCCTCGG | 215 | 0.0 | 31.394304 | 11 |