ERR1391195.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391195.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	850405
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	2610	0.30691258870773336	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1833	0.21554435827635066	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1131	0.13299545510668448	Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAAGTATATCTCGTATGCCGTC	916	0.10771338362309724	Illumina Paired End PCR Primer 2 (96% over 31bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCCGAT	375	40.799095	15
GATGACG	375	40.799095	19
TGACGTC	385	39.739376	21
ATGACGT	385	39.739376	20
CCGATGA	390	39.229897	17
GCCGATG	390	39.229897	16
AAGCCGA	390	39.229897	14
GACGTCA	395	38.73332	22
GCGGTCT	275	38.45369	36
TAAGCCG	405	38.33248	13
ACGTCAT	400	38.24915	23
CGTCATA	400	38.24915	24
CGATGAC	405	37.77694	18
TCGGGGA	285	37.10444	14
AGGCGGT	285	37.10444	34
GGCGGTC	285	37.10444	35
CTCGGGG	240	36.561687	13
ATTCGGT	290	36.464706	21
TCCTCGG	250	35.099224	11
TTCCTCG	250	35.099224	10