Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391192.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 786143 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2428 | 0.3088496622115824 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1745 | 0.2219697942995104 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 919 | 0.11689985155372495 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCGATG | 285 | 0.0 | 44.210217 | 16 |
AGCCGAT | 290 | 0.0 | 43.447968 | 15 |
GACGTCA | 295 | 0.0 | 42.711563 | 22 |
ACGTCAT | 295 | 0.0 | 42.711563 | 23 |
CGATGAC | 295 | 0.0 | 42.711563 | 18 |
CGTCATA | 295 | 0.0 | 42.711563 | 24 |
CCGATGA | 300 | 0.0 | 41.999706 | 17 |
TAAGCCG | 295 | 0.0 | 41.948856 | 13 |
TTCGGTA | 200 | 0.0 | 41.624706 | 22 |
TGACGTC | 315 | 0.0 | 39.999718 | 21 |
AAGCCGA | 315 | 0.0 | 39.999718 | 14 |
GATGACG | 315 | 0.0 | 39.999718 | 19 |
ATGACGT | 320 | 0.0 | 39.37472 | 20 |
AGGCGGT | 220 | 0.0 | 38.863365 | 34 |
CCTCGGG | 180 | 0.0 | 38.749725 | 12 |
TCGGTAT | 215 | 0.0 | 38.720654 | 23 |
AATTCGG | 220 | 0.0 | 37.840645 | 20 |
CGGTATT | 220 | 0.0 | 37.840645 | 24 |
GGCGGTC | 225 | 0.0 | 36.999737 | 35 |
TCCTCGG | 190 | 0.0 | 36.710266 | 11 |