FastQCFastQC Report
Mon 6 Jun 2016
ERR1391192.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391192.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences786143
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA24280.3088496622115824No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA17450.2219697942995104No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT9190.11689985155372495Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGATG2850.044.21021716
AGCCGAT2900.043.44796815
GACGTCA2950.042.71156322
ACGTCAT2950.042.71156323
CGATGAC2950.042.71156318
CGTCATA2950.042.71156324
CCGATGA3000.041.99970617
TAAGCCG2950.041.94885613
TTCGGTA2000.041.62470622
TGACGTC3150.039.99971821
AAGCCGA3150.039.99971814
GATGACG3150.039.99971819
ATGACGT3200.039.3747220
AGGCGGT2200.038.86336534
CCTCGGG1800.038.74972512
TCGGTAT2150.038.72065423
AATTCGG2200.037.84064520
CGGTATT2200.037.84064524
GGCGGTC2250.036.99973735
TCCTCGG1900.036.71026611