Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391190.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1361697 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5771 | 0.4238094084073035 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 4300 | 0.3157824391182473 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1572 | 0.11544418471950808 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGACGTC | 530 | 0.0 | 41.60313 | 21 |
CCGATGA | 525 | 0.0 | 41.570786 | 17 |
TAAGCCG | 525 | 0.0 | 41.14222 | 13 |
CGTCATA | 535 | 0.0 | 40.373203 | 24 |
AGCCGAT | 545 | 0.0 | 39.632412 | 15 |
ACGTCAT | 545 | 0.0 | 39.632412 | 23 |
GCCGATG | 550 | 0.0 | 39.272118 | 16 |
AATTCGG | 685 | 0.0 | 38.43006 | 20 |
GACGTCA | 570 | 0.0 | 38.28888 | 22 |
TCGGGGA | 695 | 0.0 | 38.200848 | 14 |
ATTCGGT | 690 | 0.0 | 38.151585 | 21 |
CTCGGGG | 645 | 0.0 | 38.022667 | 13 |
CCTCGGG | 640 | 0.0 | 37.968163 | 12 |
TTCCTCG | 640 | 0.0 | 37.968163 | 10 |
AGGCGGT | 700 | 0.0 | 37.927982 | 34 |
ATGACGT | 570 | 0.0 | 37.89415 | 20 |
CGATGAC | 570 | 0.0 | 37.89415 | 18 |
TATGCCG | 155 | 0.0 | 37.74135 | 43 |
AAGCCGA | 580 | 0.0 | 37.628727 | 14 |
GGCGGTC | 700 | 0.0 | 37.60656 | 35 |