FastQCFastQC Report
Mon 6 Jun 2016
ERR1391190.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391190.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1361697
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA57710.4238094084073035No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA43000.3157824391182473No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT15720.11544418471950808Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGTC5300.041.6031321
CCGATGA5250.041.57078617
TAAGCCG5250.041.1422213
CGTCATA5350.040.37320324
AGCCGAT5450.039.63241215
ACGTCAT5450.039.63241223
GCCGATG5500.039.27211816
AATTCGG6850.038.4300620
GACGTCA5700.038.2888822
TCGGGGA6950.038.20084814
ATTCGGT6900.038.15158521
CTCGGGG6450.038.02266713
CCTCGGG6400.037.96816312
TTCCTCG6400.037.96816310
AGGCGGT7000.037.92798234
ATGACGT5700.037.8941520
CGATGAC5700.037.8941518
TATGCCG1550.037.7413543
AAGCCGA5800.037.62872714
GGCGGTC7000.037.6065635