ERR1391164.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391164.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	613068
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	2950	0.48118642630181313	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	1939	0.31627812901668334	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1631	0.2660390038299177	Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCCGTC	1233	0.2011196147898765	Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC	653	0.1065134699576556	Illumina Paired End PCR Primer 2 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCCGAT	280	44.195225	15
CGATGAC	295	42.710705	18
GCCGATG	290	42.671257	16
GATTCGG	65	41.537334	11
TAAGCCG	300	41.248882	13
AATTCGG	285	40.262062	20
ATCGGAA	180	39.998913	27
CCGATGA	310	39.91827	17
AAGCCGA	310	39.91827	14
TCGGTAT	295	39.65994	23
TTCGGTA	290	39.56789	22
ACGTCAT	320	39.373928	23
GATGACG	315	39.284645	19
AGATCGG	185	38.917862	25
TCGGAAG	185	38.917862	28
GCGGTCT	300	38.248962	36
ATTCGGT	300	38.248962	21
CGGTATT	300	38.248962	24
GAATTCG	300	38.248962	19
TGACGTC	330	38.180782	21