FastQCFastQC Report
Mon 6 Jun 2016
ERR1391161.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391161.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555341
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA32370.5828851102295707No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA21820.3929117425149593No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10700.19267441085747317Illumina Paired End PCR Primer 2 (96% over 30bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC9360.16854509211457466Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC6760.12172701097163724Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATTCG603.6379788E-1241.24950410
GAATTCG3200.040.7807619
TAAGCCG3500.039.85666313
AGCCGAT3450.039.7821315
GACGTCA3450.039.7821322
AGGCGGT3300.039.54498334
AATTCGG3300.039.54498320
TTCGGTA3400.039.04364822
TCGGTAT3350.038.95475823
CCGATGA3550.038.66150717
ATGACGT3550.038.66150720
TCGGGGA3400.038.38189314
ATTCGGT3400.038.38189321
CGGGGAA3400.038.38189315
CGGTCTC3400.038.38189337
TGACGTC3650.038.2187221
ACGTCAT3650.038.2187223
AAGCCGA3600.038.1245414
CGATGAC3600.038.1245418
CGTCATA3600.038.1245424