Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391161.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 555341 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3237 | 0.5828851102295707 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2182 | 0.3929117425149593 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1070 | 0.19267441085747317 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC | 936 | 0.16854509211457466 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC | 676 | 0.12172701097163724 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGATTCG | 60 | 3.6379788E-12 | 41.249504 | 10 |
GAATTCG | 320 | 0.0 | 40.78076 | 19 |
TAAGCCG | 350 | 0.0 | 39.856663 | 13 |
AGCCGAT | 345 | 0.0 | 39.78213 | 15 |
GACGTCA | 345 | 0.0 | 39.78213 | 22 |
AGGCGGT | 330 | 0.0 | 39.544983 | 34 |
AATTCGG | 330 | 0.0 | 39.544983 | 20 |
TTCGGTA | 340 | 0.0 | 39.043648 | 22 |
TCGGTAT | 335 | 0.0 | 38.954758 | 23 |
CCGATGA | 355 | 0.0 | 38.661507 | 17 |
ATGACGT | 355 | 0.0 | 38.661507 | 20 |
TCGGGGA | 340 | 0.0 | 38.381893 | 14 |
ATTCGGT | 340 | 0.0 | 38.381893 | 21 |
CGGGGAA | 340 | 0.0 | 38.381893 | 15 |
CGGTCTC | 340 | 0.0 | 38.381893 | 37 |
TGACGTC | 365 | 0.0 | 38.21872 | 21 |
ACGTCAT | 365 | 0.0 | 38.21872 | 23 |
AAGCCGA | 360 | 0.0 | 38.12454 | 14 |
CGATGAC | 360 | 0.0 | 38.12454 | 18 |
CGTCATA | 360 | 0.0 | 38.12454 | 24 |