ERR1378581.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378581.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	386868
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTAATATCTCGTATGCC	1936	0.5004290869237052	Illumina Paired End PCR Primer 2 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	240	42.187496	42
CGAGTAA	240	42.187496	32
GACCGAG	240	42.187496	29
ACCGAGT	240	42.187496	30
TCTCGTA	240	42.187496	41
TCGTATG	240	42.187496	43
ATCTCGT	245	41.32653	40
AGACCGA	245	41.32653	28
CGTATGC	250	40.499996	44
TATCTCG	250	40.499996	39
GAGACCG	255	39.705883	27
GAGCGGT	270	38.333332	6
CCGAGAC	265	38.207546	25
CGAGACC	265	38.207546	26
CGGTTCA	275	37.636364	9
GTATGCC	270	37.5	45
GCGGTTC	280	36.964283	8
CCGAGTA	275	36.818184	31
AGCGGTT	290	35.68966	7
AGAGCGG	290	35.68966	5