ERR1378580.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378580.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430469
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC	1410	0.3275497190273864	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGGAT	155	40.643692	30
CGGATGT	155	40.643692	32
CGTATGC	160	39.373577	44
TCTCGTA	160	39.373577	41
AGACCGG	160	39.373577	28
CCGAGAC	170	38.380966	25
GCGGTTC	165	38.184875	8
CGGTTCA	165	38.18044	9
CCGGATG	165	38.18044	31
AAGAGCG	175	37.29303	4
GACCGGA	170	37.057484	29
TCGTATG	170	37.057484	43
GAGCGGT	180	36.25711	6
AGAGCGG	180	36.25711	5
AGCGGTT	180	36.2529	7
AATGCCG	180	36.248688	21
GTATGCC	175	35.998695	45
GAGACCG	185	35.268993	27
ATGCCGA	185	35.268993	22
ATCTCGT	180	34.998734	40