ERR1378576.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378576.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374236
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGACTGATCTCGTATGCC	1708	0.45639649846620844	Illumina Paired End PCR Primer 2 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGACCGA	170	43.676468	28
GTATGCC	185	41.351353	45
CGTATGC	180	41.25	44
CTCGTAT	180	41.25	42
ATCTCGT	190	40.263157	40
ACCGAGA	190	40.263157	30
GACCGAG	185	40.135136	29
GAGACCG	185	40.135136	27
TCTCGTA	190	39.078945	41
TCGTATG	190	39.078945	43
CGAGACC	200	37.125004	26
GAGCGGT	225	37.0	6
AGAGCGG	225	37.0	5
GCGGTTC	230	36.195656	8
ATGCCGA	225	36.0	22
TGCCGAG	220	35.795456	23
AGCGGTT	235	35.425533	7
CGGTTCA	230	35.217392	9
GATCTCG	225	34.0	39
AAGAGCG	245	33.97959	4