FastQCFastQC Report
Mon 6 Jun 2016
ERR1378574.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378574.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264126
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC15530.5879769503948873Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT1500.040.498342
TCGTATG1500.040.498343
CGTATGC1550.039.191944
GACCGAG1550.039.191929
TCTCGTA1550.039.191941
AGACCGA1550.039.191928
ACCGAGC1600.037.96715530
CCGAGCT1600.037.96715531
CGAGCTG1600.037.96715532
ATCTCGT1650.036.81663540
GAGACCG1650.036.81663527
AATCTCG1650.036.81663539
GTATGCC1700.035.7337945
CCGAGAC1900.031.97234225
CGAGACC2000.030.3737226
GCGGTTC1950.029.998748
CGGTTCA1950.029.998749
GAGCGGT1950.029.998746
CGGAAGA2000.029.2598481
AAGAGCG2000.029.2598484