ERR1378573.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378573.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317634
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC	1772	0.5578747867041941	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTCGTA	190	43.81579	41
CGGCATG	195	42.692307	32
GACCGGC	190	42.63158	29
GAGACCG	190	42.63158	27
CTCGTAT	200	41.625004	42
TCGTATG	200	41.625004	43
AGACCGG	195	41.53846	28
AATCTCG	210	40.714287	39
CGTATGC	205	40.609756	44
CCGGCAT	200	40.500004	31
ATCTCGT	210	39.642857	40
ACCGGCA	205	39.512196	30
AGAGCGG	240	35.625	5
GTATGCC	235	35.425533	45
AGCGGTT	250	35.100002	7
AAGAGCG	245	34.89796	4
GCGGTTC	250	34.2	8
GAGCGGT	255	33.52941	6
CCGAGAC	245	33.061226	25
CGGTTCA	260	32.884617	9