FastQCFastQC Report
Mon 6 Jun 2016
ERR1378570.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378570.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367061
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCC20330.55385889538796Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGT2500.042.29782530
CCGCGTA2500.042.29782531
CGCGTAG2500.042.29782532
GCGTAGA2500.042.29782533
CGTATGC2550.041.46845644
GACCGCG2500.041.3978729
CGTAGAA2600.040.67098634
TCGTATG2600.040.67098643
GAGACCG2550.040.58614727
AGACCGC2550.040.58614728
CTCGTAT2600.039.80564542
CCGAGAC2600.039.80564525
ATCTCGT2650.039.05459640
GAGCGGT2800.038.5746966
ATGCCGA2900.038.01528522
GCGGTTC2850.037.897958
AGCGGTT2850.037.897957
TGCCGAG2850.037.89278823
TCTCGTA2750.037.63442641
CGGTTCA2900.037.2394649