Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378570.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 367061 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTAGAATCTCGTATGCC | 2033 | 0.55385889538796 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGCGT | 250 | 0.0 | 42.297825 | 30 |
CCGCGTA | 250 | 0.0 | 42.297825 | 31 |
CGCGTAG | 250 | 0.0 | 42.297825 | 32 |
GCGTAGA | 250 | 0.0 | 42.297825 | 33 |
CGTATGC | 255 | 0.0 | 41.468456 | 44 |
GACCGCG | 250 | 0.0 | 41.39787 | 29 |
CGTAGAA | 260 | 0.0 | 40.670986 | 34 |
TCGTATG | 260 | 0.0 | 40.670986 | 43 |
GAGACCG | 255 | 0.0 | 40.586147 | 27 |
AGACCGC | 255 | 0.0 | 40.586147 | 28 |
CTCGTAT | 260 | 0.0 | 39.805645 | 42 |
CCGAGAC | 260 | 0.0 | 39.805645 | 25 |
ATCTCGT | 265 | 0.0 | 39.054596 | 40 |
GAGCGGT | 280 | 0.0 | 38.574696 | 6 |
ATGCCGA | 290 | 0.0 | 38.015285 | 22 |
GCGGTTC | 285 | 0.0 | 37.89795 | 8 |
AGCGGTT | 285 | 0.0 | 37.89795 | 7 |
TGCCGAG | 285 | 0.0 | 37.892788 | 23 |
TCTCGTA | 275 | 0.0 | 37.634426 | 41 |
CGGTTCA | 290 | 0.0 | 37.239464 | 9 |