ERR1378566.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378566.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	285761
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACGAGTATCTCGTATGCC	2134	0.7467779018130536	Illumina Paired End PCR Primer 2 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	175	43.719044	44
CGACGAG	175	43.711395	32
ACCGACG	175	43.711395	30
CCGACGA	175	43.711395	31
CTCGTAT	180	42.497192	42
CGAGTAT	180	42.497192	35
GACGAGT	180	42.497192	33
GACCGAC	175	42.425766	29
GAGACCG	175	42.425766	27
TCGTATG	190	41.444626	43
TCTCGTA	185	41.348618	41
ACGAGTA	185	41.348618	34
TATCTCG	190	40.260494	39
GTATGCC	195	39.235043	45
AGACCGA	190	39.076363	28
CGAGACC	195	38.074406	26
AAGAGCG	210	37.51065	4
GAGCGGT	205	37.327667	6
AGAGCGG	205	37.327667	5
GCGGTTC	210	36.43892	8