FastQCFastQC Report
Mon 6 Jun 2016
ERR1378564.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378564.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences318882
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC23490.7366361224528195Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT2750.040.9085242
GACCGTG2750.040.9085229
GAGACCG2750.040.9085227
AGACCGT2750.040.9085228
CCGTGCA2700.040.83276431
ACCGTGC2700.040.83276430
TCTCGTA2800.040.17801341
CGTATGC2850.039.47313344
AATCTCG2850.039.47313339
GATCGGA403.448131E-739.3744518
TCGGAAG403.448131E-739.3744520
ATCGGAA403.448131E-739.3744519
AGAGCGG3000.038.9994545
GCGGTTC2900.038.7925648
CGGAAGA2850.038.689741
CGAGACC3000.038.24946626
ATCTCGT2950.038.13506340
TCGTATG2950.038.13506343
CGTGCAG2900.038.01671232
GAGCGGT3050.037.6224256