Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378564.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 318882 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGCAGAATCTCGTATGCC | 2349 | 0.7366361224528195 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 275 | 0.0 | 40.90852 | 42 |
GACCGTG | 275 | 0.0 | 40.90852 | 29 |
GAGACCG | 275 | 0.0 | 40.90852 | 27 |
AGACCGT | 275 | 0.0 | 40.90852 | 28 |
CCGTGCA | 270 | 0.0 | 40.832764 | 31 |
ACCGTGC | 270 | 0.0 | 40.832764 | 30 |
TCTCGTA | 280 | 0.0 | 40.178013 | 41 |
CGTATGC | 285 | 0.0 | 39.473133 | 44 |
AATCTCG | 285 | 0.0 | 39.473133 | 39 |
GATCGGA | 40 | 3.448131E-7 | 39.37445 | 18 |
TCGGAAG | 40 | 3.448131E-7 | 39.37445 | 20 |
ATCGGAA | 40 | 3.448131E-7 | 39.37445 | 19 |
AGAGCGG | 300 | 0.0 | 38.999454 | 5 |
GCGGTTC | 290 | 0.0 | 38.792564 | 8 |
CGGAAGA | 285 | 0.0 | 38.68974 | 1 |
CGAGACC | 300 | 0.0 | 38.249466 | 26 |
ATCTCGT | 295 | 0.0 | 38.135063 | 40 |
TCGTATG | 295 | 0.0 | 38.135063 | 43 |
CGTGCAG | 290 | 0.0 | 38.016712 | 32 |
GAGCGGT | 305 | 0.0 | 37.622425 | 6 |