FastQCFastQC Report
Mon 6 Jun 2016
ERR1378562.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378562.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345907
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC17330.5010017143336215Illumina Paired End PCR Primer 2 (97% over 38bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG1800.038.755
TCTCGTA1700.038.3823541
GAGCGGT1850.037.70276
GCGGTTC1800.037.58
CGGTTCA1800.037.59
AGCGGTT1800.037.57
CTCGTAT1750.037.28571342
TATCTCG1750.037.28571339
GAGACCG1700.037.05882327
AAGAGCG1900.036.7105264
CGTATGC1800.036.2544
ACCGCTC1800.036.2530
CCGCTCT1800.036.2531
CGGAAGA1900.034.3421061
ATCTCGT1900.034.34210640
GACCGCT1850.034.05405429
AGACCGC1850.034.05405428
CCGAGAC1850.034.05405425
TCGTATG1950.033.46153643
CGCTCTC2000.032.62499632