Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378562.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 345907 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTCTCTATCTCGTATGCC | 1733 | 0.5010017143336215 | Illumina Paired End PCR Primer 2 (97% over 38bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGCGG | 180 | 0.0 | 38.75 | 5 |
TCTCGTA | 170 | 0.0 | 38.38235 | 41 |
GAGCGGT | 185 | 0.0 | 37.7027 | 6 |
GCGGTTC | 180 | 0.0 | 37.5 | 8 |
CGGTTCA | 180 | 0.0 | 37.5 | 9 |
AGCGGTT | 180 | 0.0 | 37.5 | 7 |
CTCGTAT | 175 | 0.0 | 37.285713 | 42 |
TATCTCG | 175 | 0.0 | 37.285713 | 39 |
GAGACCG | 170 | 0.0 | 37.058823 | 27 |
AAGAGCG | 190 | 0.0 | 36.710526 | 4 |
CGTATGC | 180 | 0.0 | 36.25 | 44 |
ACCGCTC | 180 | 0.0 | 36.25 | 30 |
CCGCTCT | 180 | 0.0 | 36.25 | 31 |
CGGAAGA | 190 | 0.0 | 34.342106 | 1 |
ATCTCGT | 190 | 0.0 | 34.342106 | 40 |
GACCGCT | 185 | 0.0 | 34.054054 | 29 |
AGACCGC | 185 | 0.0 | 34.054054 | 28 |
CCGAGAC | 185 | 0.0 | 34.054054 | 25 |
TCGTATG | 195 | 0.0 | 33.461536 | 43 |
CGCTCTC | 200 | 0.0 | 32.624996 | 32 |