ERR1378559.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378559.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	319181
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC	2975	0.9320730243968156	Illumina Paired End PCR Primer 2 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGATAG	290	45.003445	31
GACCGAT	290	45.003445	29
AGACCGA	290	45.003445	28
CGATAGC	295	45.003445	32
TAGCGAT	305	44.25875	35
GATAGCG	300	44.25339	33
AGCGATC	300	44.24646	36
CGTATGC	295	44.240677	44
GAGACCG	295	44.240677	27
TCTCGTA	290	44.227524	41
ATAGCGA	305	43.527924	34
ACCGATA	300	43.50333	30
CTCGTAT	295	43.477905	42
TCGTATG	295	43.477905	43
ATCTCGT	305	42.790165	40
GCGATCT	300	42.74658	37
GATCTCG	325	40.84928	39
GTATGCC	320	40.784374	45
CCGAGAC	315	40.711025	25
CGATCTC	330	39.54229	38