Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378558.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 176934 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC | 2398 | 1.3553076288333503 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATACGA | 280 | 0.0 | 43.392857 | 34 |
ACCGGAT | 280 | 0.0 | 43.392857 | 30 |
GACCGGA | 280 | 0.0 | 43.392857 | 29 |
GGATACG | 280 | 0.0 | 43.392857 | 33 |
AGACCGG | 280 | 0.0 | 43.392857 | 28 |
CGTATGC | 285 | 0.0 | 42.63158 | 44 |
GAGACCG | 285 | 0.0 | 42.63158 | 27 |
ATCTCGT | 280 | 0.0 | 42.589283 | 40 |
TACGATC | 280 | 0.0 | 42.589283 | 36 |
CCGGATA | 290 | 0.0 | 41.89655 | 31 |
CGGATAC | 290 | 0.0 | 41.89655 | 32 |
GTATGCC | 290 | 0.0 | 41.89655 | 45 |
TCGTATG | 290 | 0.0 | 41.89655 | 43 |
CGAGACC | 290 | 0.0 | 41.89655 | 26 |
CTCGTAT | 285 | 0.0 | 41.842106 | 42 |
ATACGAT | 295 | 0.0 | 41.18644 | 35 |
ACGATCT | 290 | 0.0 | 41.12069 | 37 |
TCTCGTA | 290 | 0.0 | 41.12069 | 41 |
CGGTTCA | 305 | 0.0 | 39.836067 | 9 |
GAGCGGT | 305 | 0.0 | 39.836067 | 6 |