FastQCFastQC Report
Mon 6 Jun 2016
ERR1378558.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378558.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176934
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC23981.3553076288333503Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATACGA2800.043.39285734
ACCGGAT2800.043.39285730
GACCGGA2800.043.39285729
GGATACG2800.043.39285733
AGACCGG2800.043.39285728
CGTATGC2850.042.6315844
GAGACCG2850.042.6315827
ATCTCGT2800.042.58928340
TACGATC2800.042.58928336
CCGGATA2900.041.8965531
CGGATAC2900.041.8965532
GTATGCC2900.041.8965545
TCGTATG2900.041.8965543
CGAGACC2900.041.8965526
CTCGTAT2850.041.84210642
ATACGAT2950.041.1864435
ACGATCT2900.041.1206937
TCTCGTA2900.041.1206941
CGGTTCA3050.039.8360679
GAGCGGT3050.039.8360676