ERR1378558.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378558.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	176934
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATACGATCTCGTATGCC	2398	1.3553076288333503	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATACGA	280	43.392857	34
ACCGGAT	280	43.392857	30
GACCGGA	280	43.392857	29
GGATACG	280	43.392857	33
AGACCGG	280	43.392857	28
CGTATGC	285	42.63158	44
GAGACCG	285	42.63158	27
ATCTCGT	280	42.589283	40
TACGATC	280	42.589283	36
CCGGATA	290	41.89655	31
CGGATAC	290	41.89655	32
GTATGCC	290	41.89655	45
TCGTATG	290	41.89655	43
CGAGACC	290	41.89655	26
CTCGTAT	285	41.842106	42
ATACGAT	295	41.18644	35
ACGATCT	290	41.12069	37
TCTCGTA	290	41.12069	41
CGGTTCA	305	39.836067	9
GAGCGGT	305	39.836067	6