ERR1378556.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378556.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	220897
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC	1623	0.734731571728	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	165	45.000004	42
CGTATGC	170	43.676468	44
TCTCGTA	170	43.676468	41
AGACCGC	165	43.636368	28
CCGCAGA	165	43.636368	31
TCGTATG	175	42.42857	43
CGCAGAC	175	42.42857	32
ACCGCAG	170	42.35294	30
GACCGCA	170	42.35294	29
GCGGTTC	180	41.25	8
CGGTTCA	180	41.25	9
AATCTCG	180	41.25	39
GAGACCG	175	41.142857	27
AGCGGTT	185	40.135136	7
GAGCGGT	185	40.135136	6
AGAGCGG	185	40.135136	5
TGCCGAG	185	40.135136	23
ATCTCGT	190	39.078945	40
GACAATC	190	39.078945	36
AATGCCG	190	39.078945	21