ERR1378552.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378552.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	227631
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTAGATCTCGTATGCC	2847	1.2507083833045587	Illumina Paired End PCR Primer 2 (96% over 33bp)
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	286	0.12564193804885979	Illumina Paired End PCR Primer 2 (100% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCAG	340	41.027008	30
TCTCGTA	335	40.96775	41
GAGCGGT	355	40.569916	6
CGCAGTA	345	40.432415	32
CCGCAGT	345	40.432415	31
ATCTCGT	340	40.365284	40
GAGACCG	340	40.365284	27
GTAGATC	340	40.365284	36
GCGGTTC	360	40.006447	8
AGCGGTT	360	40.006447	7
CGGTTCA	360	39.997658	9
CGGAAGA	355	39.936012	1
CGTATGC	345	39.780277	44
CTCGTAT	345	39.780277	42
GACCGCA	345	39.780277	29
AGACCGC	345	39.780277	28
AAGAGCG	370	39.542084	4
GTATGCC	350	39.21199	45
CCGAGAC	350	39.21199	25
GATCTCG	350	39.21199	39