Basic Statistics
Measure | Value |
---|---|
Filename | ERR1378548.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 321841 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC | 2742 | 0.8519734900152559 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 270 | 0.0 | 43.333187 | 44 |
TCGTATG | 270 | 0.0 | 43.333187 | 43 |
GACCGAG | 280 | 0.0 | 42.589138 | 29 |
GAGACCG | 280 | 0.0 | 42.589138 | 27 |
AGACCGA | 280 | 0.0 | 42.589138 | 28 |
CTCGTAT | 270 | 0.0 | 42.499855 | 42 |
ACCGAGT | 285 | 0.0 | 41.84196 | 30 |
GTATGCC | 280 | 0.0 | 41.78557 | 45 |
TCTCGTA | 275 | 0.0 | 41.72713 | 41 |
CGAGTGA | 290 | 0.0 | 41.12055 | 32 |
CCGAGTG | 300 | 0.0 | 39.74986 | 31 |
CATCTCG | 295 | 0.0 | 39.66088 | 39 |
CGAGACC | 315 | 0.0 | 37.85701 | 26 |
ATCTCGT | 315 | 0.0 | 37.142727 | 40 |
GCGGTTC | 345 | 0.0 | 35.869442 | 8 |
AGCGGTT | 345 | 0.0 | 35.869442 | 7 |
AGAGCGG | 345 | 0.0 | 35.869442 | 5 |
GAGCGGT | 350 | 0.0 | 35.35702 | 6 |
CGGTTCA | 350 | 0.0 | 34.714165 | 9 |
GAGTGAC | 345 | 0.0 | 34.565098 | 33 |