ERR1378548.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378548.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	321841
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC	2742	0.8519734900152559	Illumina Paired End PCR Primer 2 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	270	43.333187	44
TCGTATG	270	43.333187	43
GACCGAG	280	42.589138	29
GAGACCG	280	42.589138	27
AGACCGA	280	42.589138	28
CTCGTAT	270	42.499855	42
ACCGAGT	285	41.84196	30
GTATGCC	280	41.78557	45
TCTCGTA	275	41.72713	41
CGAGTGA	290	41.12055	32
CCGAGTG	300	39.74986	31
CATCTCG	295	39.66088	39
CGAGACC	315	37.85701	26
ATCTCGT	315	37.142727	40
GCGGTTC	345	35.869442	8
AGCGGTT	345	35.869442	7
AGAGCGG	345	35.869442	5
GAGCGGT	350	35.35702	6
CGGTTCA	350	34.714165	9
GAGTGAC	345	34.565098	33