FastQCFastQC Report
Mon 6 Jun 2016
ERR1378548.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1378548.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences321841
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGACATCTCGTATGCC27420.8519734900152559Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC2700.043.33318744
TCGTATG2700.043.33318743
GACCGAG2800.042.58913829
GAGACCG2800.042.58913827
AGACCGA2800.042.58913828
CTCGTAT2700.042.49985542
ACCGAGT2850.041.8419630
GTATGCC2800.041.7855745
TCTCGTA2750.041.7271341
CGAGTGA2900.041.1205532
CCGAGTG3000.039.7498631
CATCTCG2950.039.6608839
CGAGACC3150.037.8570126
ATCTCGT3150.037.14272740
GCGGTTC3450.035.8694428
AGCGGTT3450.035.8694427
AGAGCGG3450.035.8694425
GAGCGGT3500.035.357026
CGGTTCA3500.034.7141659
GAGTGAC3450.034.56509833