ERR1378542.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378542.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276456
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGACAGATCTCGTATGCC	2219	0.802659374366988	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACCGTG	290	43.4481	29
AGACCGT	290	43.4481	28
ACCGTGA	300	42.74983	30
ATCTCGT	295	42.711693	40
CGTATGC	295	42.711693	44
GAGACCG	295	42.711693	27
GATCTCG	295	42.711693	39
CCGTGAC	305	42.04901	31
CTCGTAT	300	41.99983	42
TCTCGTA	300	41.99983	41
TCGTATG	300	41.99983	43
CGAGACC	300	41.249832	26
CGTGACA	315	40.714123	32
GTATGCC	325	38.769077	45
GCGGTTC	345	37.173763	8
AAGAGCG	345	37.173763	4
CGGTTCA	345	37.173763	9
AGAGCGG	345	37.173763	5
AGCGGTT	350	36.642708	7
GAGCGGT	350	36.642708	6