ERR1378540.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378540.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478678
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTCTAATCTCGTATGCC	2783	0.5813929196662474	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	310	42.09599	44
CTCGTAT	310	42.09599	42
TCGTATG	310	42.09599	43
TCTCGTA	310	41.370197	41
GACCGTG	330	39.544716	29
GAGACCG	330	39.544716	27
AATCTCG	330	38.86291	39
AGACCGT	340	38.381638	28
ATCTCGT	335	38.28287	40
CCGTGTC	345	37.825386	31
CCGAGAC	335	37.611244	25
GCGGTTC	350	37.28502	8
CGGTTCA	350	37.28502	9
GTATGCC	350	37.28502	45
CGTGTCT	350	37.28502	32
ACCGTGT	350	37.28502	30
TGCCGAG	350	36.642174	23
AGCGGTT	365	35.75276	7
CGGAAGA	360	35.635506	1
ATGCCGA	360	35.624336	22