ERR1378539.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1378539.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	363853
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATCTGATCTCGTATGCC	2313	0.6356962839388435	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCTCGT	260	44.132862	40
CTCGTAT	260	44.132862	42
TCTCGTA	265	43.300163	41
TCGTATG	265	43.300163	43
GACCGTA	260	43.26751	29
GAGACCG	260	43.26751	27
CGTATGC	270	42.504154	44
CCGTATC	270	42.498314	31
AGACCGT	265	42.45114	28
CGTATCT	280	40.980515	32
AGCGGTT	295	39.659443	7
ACCGTAT	290	39.567394	30
GAGCGGT	300	39.003815	6
GTATGCC	295	38.902107	45
CGAGACC	290	38.79156	26
GCGGTTC	305	38.35913	8
GATCTCG	300	38.248486	39
AGAGCGG	310	37.750813	5
CGGTTCA	315	37.141384	9
CCGAGAC	305	36.88378	25